Imaging Computational Microscope
The Imaging Computational Microscope is a matlab gui for automated analysis of Calcium and Voltage-Sensitive Dye imaging data. Check out this post for an overview of the main functionality.
1. Download the zip or contribute to the open source project
3. Navigate to ImagingComputationalMicroscope-develop folder in matlab
4. run install_icm.m in matlab.
5. Check out icm_basics.m
6. Open documentation in browser: doc/index.html
*Need Matlab version 2013a or later. The zip package includes all dependencies: ecc, FastICA_25, GUILayout-v1p13.
At some point there will be a paper describing ICM, which you can reference if you use the software for analysis. For now just let me know if you use it, especially in a publication.
This is a pre-alpha release of the Imaging Computatoinal Microscope GUI. Please contact me for feature suggestions or bugs.
Copyright (C) 2013 E. Paxon Frady
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.